I've encountered a difference in the behavior of the gui hxcfloppyemulator versus the command-line hxcfe, despite what I believe to be identical config.script / internal parameter settings.
Within the gui tool, loading the first track00.0.raw file of a 2.88mb "Extended-Density" correctly overlays the 36 sectors:

- gui.jpg (116.82 KiB) Viewed 1052 times
But executing this command results in a kind or red-purple error overlay:
Code: Select all
hxcfe -script:config.script -finput:Mathematica_202_Disk1/track00.0.raw -foutput:Mathematica_202_Disk1.bmp -conv:BMP_DISK_IMAGE

- cmd-resized.jpg (126.68 KiB) Viewed 1053 times
I'm not sure if there's a way to "force" an interpretation of the raw data according to IBM MFM?